GABAC : An arithmetic coding solution for genomic data

Show simple item record

dc.identifier.uri http://dx.doi.org/10.15488/10852
dc.identifier.uri https://www.repo.uni-hannover.de/handle/123456789/10934
dc.contributor.author Voges, Jan
dc.contributor.author Paridaens, Tom
dc.contributor.author Müntefering, Fabian
dc.contributor.author Mainzer, Liudmila S.
dc.contributor.author Bliss, Brian
dc.contributor.author Yang, Mingyu
dc.contributor.author Ochoa, Idoia
dc.contributor.author Fostier, Jan
dc.contributor.author Ostermann, Jörn
dc.contributor.author Hernaez, Mikel
dc.date.accessioned 2021-05-03T05:28:05Z
dc.date.available 2021-05-03T05:28:05Z
dc.date.issued 2020
dc.identifier.citation Voges, J.; Paridaens, T.; Müntefering, F.; Mainzer, L.S.; Bliss, B. et al.: GABAC : An arithmetic coding solution for genomic data. In: Bioinformatics 36 (2020), Nr. 7, S. 2275-2277. DOI: https://doi.org/10.1093/bioinformatics/btz922
dc.description.abstract Motivation: In an effort to provide a response to the ever-expanding generation of genomic data, the International Organization for Standardization (ISO) is designing a new solution for the representation, compression and management of genomic sequencing data: the Moving Picture Experts Group (MPEG)-G standard. This paper discusses the first implementation of an MPEG-G compliant entropy codec: GABAC. GABAC combines proven coding technologies, such as context-adaptive binary arithmetic coding, binarization schemes and transformations, into a straightforward solution for the compression of sequencing data. Results: We demonstrate that GABAC outperforms well-established (entropy) codecs in a significant set of cases and thus can serve as an extension for existing genomic compression solutions, such as CRAM. © 2019 The Author(s). Published by Oxford University Press. eng
dc.language.iso eng
dc.publisher Oxford : Oxford Univ. Press
dc.relation.ispartofseries Bioinformatics 36 (2020), Nr. 7
dc.rights CC BY-NC 4.0 Unported
dc.rights.uri https://creativecommons.org/licenses/by-nc/4.0/
dc.subject genomic data eng
dc.subject International Organization for Standardization (ISO) eng
dc.subject Moving Picture Experts Group (MPEG) eng
dc.subject MPEG-G compliant entropy codec eng
dc.subject GABAC eng
dc.subject coding eng
dc.subject.ddc 004 | Informatik ger
dc.subject.ddc 570 | Biowissenschaften, Biologie ger
dc.title GABAC : An arithmetic coding solution for genomic data
dc.type article
dc.type Text
dc.relation.essn 1367-4811
dc.relation.essn 1460-2059
dc.relation.issn 0266-7061
dc.relation.issn 1367-4803
dc.relation.doi https://doi.org/10.1093/bioinformatics/btz922
dc.bibliographicCitation.issue 7
dc.bibliographicCitation.volume 36
dc.bibliographicCitation.firstPage 2275
dc.bibliographicCitation.lastPage 2277
dc.description.version publishedVersion
tib.accessRights frei zug�nglich


Files in this item

This item appears in the following Collection(s):

Show simple item record

 

Search the repository


Browse

My Account

Usage Statistics