GABAC : An arithmetic coding solution for genomic data

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dc.identifier.uri Voges, Jan Paridaens, Tom Müntefering, Fabian Mainzer, Liudmila S. Bliss, Brian Yang, Mingyu Ochoa, Idoia Fostier, Jan Ostermann, Jörn Hernaez, Mikel 2021-05-03T05:28:05Z 2021-05-03T05:28:05Z 2020
dc.identifier.citation Voges, J.; Paridaens, T.; Müntefering, F.; Mainzer, L.S.; Bliss, B. et al.: GABAC : An arithmetic coding solution for genomic data. In: Bioinformatics 36 (2020), Nr. 7, S. 2275-2277. DOI:
dc.description.abstract Motivation: In an effort to provide a response to the ever-expanding generation of genomic data, the International Organization for Standardization (ISO) is designing a new solution for the representation, compression and management of genomic sequencing data: the Moving Picture Experts Group (MPEG)-G standard. This paper discusses the first implementation of an MPEG-G compliant entropy codec: GABAC. GABAC combines proven coding technologies, such as context-adaptive binary arithmetic coding, binarization schemes and transformations, into a straightforward solution for the compression of sequencing data. Results: We demonstrate that GABAC outperforms well-established (entropy) codecs in a significant set of cases and thus can serve as an extension for existing genomic compression solutions, such as CRAM. © 2019 The Author(s). Published by Oxford University Press. eng
dc.language.iso eng
dc.publisher Oxford : Oxford Univ. Press
dc.relation.ispartofseries Bioinformatics 36 (2020), Nr. 7
dc.rights CC BY-NC 4.0 Unported
dc.subject genomic data eng
dc.subject International Organization for Standardization (ISO) eng
dc.subject Moving Picture Experts Group (MPEG) eng
dc.subject MPEG-G compliant entropy codec eng
dc.subject GABAC eng
dc.subject coding eng
dc.subject.ddc 004 | Informatik ger
dc.subject.ddc 570 | Biowissenschaften, Biologie ger
dc.title GABAC : An arithmetic coding solution for genomic data
dc.type Article
dc.type Text
dc.relation.essn 1367-4811
dc.relation.essn 1460-2059
dc.relation.issn 0266-7061
dc.relation.issn 1367-4803
dc.bibliographicCitation.issue 7
dc.bibliographicCitation.volume 36
dc.bibliographicCitation.firstPage 2275
dc.bibliographicCitation.lastPage 2277
dc.description.version publishedVersion
tib.accessRights frei zug�nglich

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