dc.identifier.uri |
http://dx.doi.org/10.15488/10852 |
|
dc.identifier.uri |
https://www.repo.uni-hannover.de/handle/123456789/10934 |
|
dc.contributor.author |
Voges, Jan
|
|
dc.contributor.author |
Paridaens, Tom
|
|
dc.contributor.author |
Müntefering, Fabian
|
|
dc.contributor.author |
Mainzer, Liudmila S.
|
|
dc.contributor.author |
Bliss, Brian
|
|
dc.contributor.author |
Yang, Mingyu
|
|
dc.contributor.author |
Ochoa, Idoia
|
|
dc.contributor.author |
Fostier, Jan
|
|
dc.contributor.author |
Ostermann, Jörn
|
|
dc.contributor.author |
Hernaez, Mikel
|
|
dc.date.accessioned |
2021-05-03T05:28:05Z |
|
dc.date.available |
2021-05-03T05:28:05Z |
|
dc.date.issued |
2020 |
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dc.identifier.citation |
Voges, J.; Paridaens, T.; Müntefering, F.; Mainzer, L.S.; Bliss, B. et al.: GABAC : An arithmetic coding solution for genomic data. In: Bioinformatics 36 (2020), Nr. 7, S. 2275-2277. DOI: https://doi.org/10.1093/bioinformatics/btz922 |
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dc.description.abstract |
Motivation: In an effort to provide a response to the ever-expanding generation of genomic data, the International Organization for Standardization (ISO) is designing a new solution for the representation, compression and management of genomic sequencing data: the Moving Picture Experts Group (MPEG)-G standard. This paper discusses the first implementation of an MPEG-G compliant entropy codec: GABAC. GABAC combines proven coding technologies, such as context-adaptive binary arithmetic coding, binarization schemes and transformations, into a straightforward solution for the compression of sequencing data. Results: We demonstrate that GABAC outperforms well-established (entropy) codecs in a significant set of cases and thus can serve as an extension for existing genomic compression solutions, such as CRAM. © 2019 The Author(s). Published by Oxford University Press. |
eng |
dc.language.iso |
eng |
|
dc.publisher |
Oxford : Oxford Univ. Press |
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dc.relation.ispartofseries |
Bioinformatics 36 (2020), Nr. 7 |
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dc.rights |
CC BY-NC 4.0 Unported |
|
dc.rights.uri |
https://creativecommons.org/licenses/by-nc/4.0/ |
|
dc.subject |
genomic data |
eng |
dc.subject |
International Organization for Standardization (ISO) |
eng |
dc.subject |
Moving Picture Experts Group (MPEG) |
eng |
dc.subject |
MPEG-G compliant entropy codec |
eng |
dc.subject |
GABAC |
eng |
dc.subject |
coding |
eng |
dc.subject.ddc |
004 | Informatik
|
ger |
dc.subject.ddc |
570 | Biowissenschaften, Biologie
|
ger |
dc.title |
GABAC : An arithmetic coding solution for genomic data |
|
dc.type |
Article |
|
dc.type |
Text |
|
dc.relation.essn |
1367-4811 |
|
dc.relation.essn |
1460-2059 |
|
dc.relation.issn |
0266-7061 |
|
dc.relation.issn |
1367-4803 |
|
dc.relation.doi |
https://doi.org/10.1093/bioinformatics/btz922 |
|
dc.bibliographicCitation.issue |
7 |
|
dc.bibliographicCitation.volume |
36 |
|
dc.bibliographicCitation.firstPage |
2275 |
|
dc.bibliographicCitation.lastPage |
2277 |
|
dc.description.version |
publishedVersion |
|
tib.accessRights |
frei zug�nglich |
|