SciBERT-based semantification of bioassays in the open research knowledge graph

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Anteghini, M.; D'Souza, J.; Dos Santos, V.A.P.M.; Auer, S.: SciBERT-based semantification of bioassays in the open research knowledge graph. In: Garijo, Daniel; Lawrynowicz, Agnieszka (Eds.): EKAW-PD 2020, posters and demonstrations at EKAW 2020 : proceedings of the EKAW 2020 Posters and Demonstrations session, co-located with 22nd International Conference on Knowledge Engineering and Knowledge Management (EKAW 2020). Aachen, Germany : RWTH Aachen, 2020 (CEUR Workshop Proceedings ; 2751), S. 22-30.

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To cite the version in the repository, please use this identifier: https://doi.org/10.15488/16296

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Abstract: 
As a novel contribution to the problem of semantifying biological assays, in this paper, we propose a neural-network-based approach to automatically semantify, thereby structure, unstructured bioassay text descriptions. Experimental evaluations, to this end, show promise as the neural-based semantification significantly outperforms a naive frequencybased baseline approach. Specifically, the neural method attains 72% F1 versus 47% F1 from the frequency-based method. The work in this paper aligns with the present cutting-edge trend of the scholarly knowledge digitalization impetus which aim to convert the long-standing document-based format of scholarly content into knowledge graphs (KG). To this end, our selected data domain of bioassays are a prime candidate for structuring into KGs
License of this version: CC BY 4.0 Unported
Document Type: BookPart
Publishing status: publishedVersion
Issue Date: 2020
Appears in Collections:Zentrale Einrichtungen

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1 image of flag of Germany Germany 9 75.00%
2 image of flag of United States United States 3 25.00%

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