Factors determining microbial colonization of liquid nitrogen storage tanks used for archiving biological samples

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Bajerski, F.; Bürger, A.; Glasmacher, B.; Keller, E.R.J.; Müller, K. et al.: Factors determining microbial colonization of liquid nitrogen storage tanks used for archiving biological samples. In: Applied Microbiology and Biotechnology 104 (2020), Nr. 1, S. 131-144. DOI: https://doi.org/10.1007/s00253-019-10242-1

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The availability of bioresources is a precondition for life science research, medical applications, and diagnostics, but requires a dedicated quality management to guarantee reliable and safe storage. Anecdotal reports of bacterial isolates and sample contamination indicate that organisms may persist in liquid nitrogen (LN) storage tanks. To evaluate the safety status of cryocollections, we systematically screened organisms in the LN phase and in ice layers covering inner surfaces of storage tanks maintained in different biobanking facilities. We applied a culture-independent approach combining cell detection by epifluorescence microscopy with the amplification of group-specific marker genes and high-throughput sequencing of bacterial ribosomal genes. In the LN phase, neither cells nor bacterial 16S rRNA gene copy numbers were detectable (detection limit, 102 cells per ml, 103 gene copies per ml). In several cases, small numbers of bacteria of up to 104 cells per ml and up to 106 gene copies per ml, as well as Mycoplasma, or fungi were detected in the ice phase formed underneath the lids or accumulated at the bottom. The bacteria most likely originated from the stored materials themselves (Elizabethingia, Janthibacterium), the technical environment (Pseudomonas, Acinetobacter, Methylobacterium), or the human microbiome (Bacteroides, Streptococcus, Staphylococcus). In single cases, bacteria, Mycoplasma, fungi, and human cells were detected in the debris at the bottom of the storage tanks. In conclusion, the limited microbial load of the ice phase and in the debris of storage tanks can be effectively avoided by minimizing ice formation and by employing hermetically sealed sample containers.
License of this version: CC BY 4.0 Unported
Document Type: Article
Publishing status: publishedVersion
Issue Date: 2020
Appears in Collections:Fakultät für Maschinenbau

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pos. country downloads
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1 image of flag of Germany Germany 51 40.16%
2 image of flag of United States United States 27 21.26%
3 image of flag of China China 10 7.87%
4 image of flag of Philippines Philippines 8 6.30%
5 image of flag of United Kingdom United Kingdom 5 3.94%
6 image of flag of France France 3 2.36%
7 image of flag of Czech Republic Czech Republic 3 2.36%
8 image of flag of Japan Japan 2 1.57%
9 image of flag of Spain Spain 2 1.57%
10 image of flag of Canada Canada 2 1.57%
    other countries 14 11.02%

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