Data of the molecular dynamics simulations of mutations in the human connexin46 docking interface

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Schadzek, Patrik; Schlingmann, Barbara; Schaarschmidt, Frank; Lindner, Julia; Koval, Michael et al.: Data of the molecular dynamics simulations of mutations in the human connexin46 docking interface. In: Data in Brief 7 (2016), S. 93-99. DOI: http://dx.doi.org/10.1016/j.dib.2016.01.067

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Abstract: 
The structure of hCx26 derived from the X-ray analysis was used to generate a homology model for hCx46. Interacting connexin molecules were used as starting model for the molecular dynamics (MD) simulation using NAMD and allowed us to predict the dynamic behavior of hCx46wt and the cataract related mutant hCx46N188T as well as two artificial mutants hCx46N188Q and hCx46N188D. Within the 50 ns simulation time the docked complex composed of the mutants dissociate while hCx46wt remains stable. The data indicates that one hCx46 molecule forms 5-7 hydrogen bonds (HBs) with the counterpart connexin of the opposing connexon. These HBs appear essential for a stable docking of the connexons as shown by the simulation of an entire gap junction channel and were lost for all the tested mutants. The data described here are related to the research article entitled "The cataract related mutation N188T in human connexin46 (hCx46) revealed a critical role for residue N188 in the docking process of gap junction channels" (Schadzek et al., 2015) [1].
License of this version: CC BY 4.0 Unported
Document Type: article
Publishing status: publishedVersion
Issue Date: 2016
Appears in Collections:Naturwissenschaftliche Fakultät

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1 image of flag of Germany Germany 108 87.10%
2 image of flag of United States United States 3 2.42%
3 image of flag of Netherlands Netherlands 2 1.61%
4 image of flag of Hungary Hungary 2 1.61%
5 image of flag of United Kingdom United Kingdom 2 1.61%
6 image of flag of China China 2 1.61%
7 image of flag of Russian Federation Russian Federation 1 0.81%
8 image of flag of Mexico Mexico 1 0.81%
9 image of flag of India India 1 0.81%
10 image of flag of Switzerland Switzerland 1 0.81%
    other countries 1 0.81%

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