We introduce a non-commutative generalization of the Gross-Pitaevskii equation for one-dimensional quantum gasses and quantum liquids. This generalization is obtained by applying the time-dependent variational principle to the variational manifold of continuous matrix product states. This allows for a full quantum description of many body system - including entanglement and correlations-and thus extends significantly beyond the usual mean-field description of the Gross-Pitaevskii equation, which is known to fail for (quasi) one-dimensional systems. By linearizing around a stationary solution, we furthermore derive an associated generalization of the Bogoliubov - de Gennes equations. This framework is applied to compute the steady state response amplitude to a periodic perturbation of the potential.