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Download statistics - Document (COUNTER):
Voges, J.; Paridaens, T.; Müntefering, F.; Mainzer, L.S.; Bliss, B. et al.: GABAC : An arithmetic coding solution for genomic data. In: Bioinformatics 36 (2020), Nr. 7, S. 2275-2277. DOI: https://doi.org/10.1093/bioinformatics/btz922
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Selected time period:
Sum total of downloads: 154
| Abstract: | |
Motivation: In an effort to provide a response to the ever-expanding generation of genomic data, the International Organization for Standardization (ISO) is designing a new solution for the representation, compression and management of genomic sequencing data: the Moving Picture Experts Group (MPEG)-G standard. This paper discusses the first implementation of an MPEG-G compliant entropy codec: GABAC. GABAC combines proven coding technologies, such as context-adaptive binary arithmetic coding, binarization schemes and transformations, into a straightforward solution for the compression of sequencing data. Results: We demonstrate that GABAC outperforms well-established (entropy) codecs in a significant set of cases and thus can serve as an extension for existing genomic compression solutions, such as CRAM. © 2019 The Author(s). Published by Oxford University Press. | |
| License of this version: | CC BY-NC 4.0 Unported |
| Document Type: | Article |
| Publishing status: | publishedVersion |
| Issue Date: | 2020 |
| Appears in Collections: | Fakultät für Elektrotechnik und Informatik |
distribution of downloads over the selected time period:
downloads by country:
| pos. | country | downloads | ||
|---|---|---|---|---|
| total | perc. | |||
| 1 |  |
Germany | 105 | 68.18% |
| 2 |  |
United States | 27 | 17.53% |
| 3 |  |
China | 6 | 3.90% |
| 4 |  |
Taiwan | 2 | 1.30% |
| 5 |  |
Russian Federation | 2 | 1.30% |
| 6 |  |
India | 2 | 1.30% |
| 7 |  |
Israel | 2 | 1.30% |
| 8 |  |
Spain | 2 | 1.30% |
| 9 |  |
Norway | 1 | 0.65% |
| 10 |  |
Japan | 1 | 0.65% |
| other countries | 4 | 2.60% | ||
Further download figures and rankings:
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