Browsing by Subject "Embeddings"

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Capturing protein domain structure and function using self-supervision on domain architectures

Melidis, Damianos P.; Nejdl, Wolfgang (Basel : MDPI AG, 2021)

Predicting biological properties of unseen proteins is shown to be improved by the use of protein sequence embeddings. However, these sequence embeddings have the caveat that biological metadata do not exist for each amino ...
Interaction Network Analysis Using Semantic Similarity Based on Translation Embeddings

Manzoor Bajwa, Awais; Collarana, Diego; Vidal, Maria-Esther (Cham : Springer, 2019)

Biomedical knowledge graphs such as STITCH, SIDER, and Drugbank provide the basis for the discovery of associations between biomedical entities, e.g., interactions between drugs and targets. Link prediction is a paramount ...

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