Carbon dioxide (CO2) and methane (CH4) are recognized as the main greenhouse gases causing climate warming. In forest ecosystems, the death of trees leads to the formation of coarse woody debris (CWD) that is one of the sources of greenhouse gas emissions due to wood decomposi-tion. We quantified the CO2 and CH4 fluxes from CWD of larch (Larix gmelinii (Rupr.)) and birch (Betula tortuosa Ledeb.) collected in the northern boreal forests of Central Siberia. The CWD samples were incubated at +5, +15 and +25◦ C. The CO2 and CH4 fluxes showed strong correlations with temperature, moisture, decomposition stage and the type of wood’s rot. The temperature coefficient Q10 indicated higher temperature sensitivity of CO2 flux within the temperature interval from +5 to +15◦ C than from +15 to +25◦ C. Methane flux had higher temperature sensitivity within the interval from +15 to +25◦ C. It was found that, in boreal forests, CWD of early decay stage can serve as a source of methane to the atmosphere when air temperatures increased above +15◦ C. Strong positive correlation between CH4 production and CO2 emission indicated a biological source and supported findings on aerobic origin of the main process contributing to the CH4 flux from decomposing CWD.